Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5934Hypothetical protein. (64 aa)    
Predicted Functional Partners:
CUS_5933
Hypothetical protein.
 
     0.957
CUS_5932
Phage replisome organizer N-terminal domain protein; Identified by match to protein family HMM PF09681; match to protein family HMM TIGR01714.
 
     0.921
CUS_5930
Relaxase/mobilization nuclease domain protein; Identified by match to protein family HMM PF03432.
 
     0.886
CUS_5935
Putative TnpX site-specific recombinase; Identified by match to protein family HMM PF00239; match to protein family HMM PF07508.
 
     0.875
CUS_5931
Hypothetical protein.
 
     0.866
CUS_5085
Conserved domain protein.
  
     0.731
CUS_5944
Conserved domain protein.
  
     0.711
CUS_7901
Hypothetical protein; Identified by glimmer; putative.
  
     0.699
CUS_5834
Conserved domain protein.
  
     0.677
CUS_6655
Conserved domain protein.
  
     0.674
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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