Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5941Hypothetical protein. (158 aa)    
Predicted Functional Partners:
CUS_5944
Conserved domain protein.
 
     0.914
CUS_5939
TraG/TraD family protein.
 
     0.887
CUS_5938
Hypothetical protein; Identified by glimmer; putative.
 
     0.856
CUS_5942
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a premature stop; identified by glimmer; putative.
       0.773
CUS_5943
Hypothetical protein; Identified by glimmer; putative.
       0.773
CUS_5101
Hypothetical protein.
  
     0.772
CUS_4316
TraG family protein.
  
     0.771
CUS_5085
Conserved domain protein.
  
     0.771
CUS_6650
TraG family protein.
  
     0.771
CUS_7463
Hypothetical protein; Identified by glimmer; putative.
  
     0.771
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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