STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_5972Carbohydrate kinase, FGGY family protein; Identified by match to protein family HMM PF00370; match to protein family HMM PF02782. (526 aa)    
Predicted Functional Partners:
araD
L-ribulose-5-phosphate 4-epimerase; Identified by match to protein family HMM PF00596; match to protein family HMM TIGR00760.
 
 
 0.969
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.890
CUS_5973
Identified by match to protein family HMM PF04237.
       0.773
CUS_5212
Putative arabinose metabolism transcriptional repressor; Identified by match to protein family HMM PF00392; match to protein family HMM PF00532.
 
 
   0.674
CUS_5971
Hypothetical protein; Identified by glimmer; putative.
       0.664
CUS_6213
Hypothetical protein.
 
 
 0.634
rpe
Ribulose-phosphate 3-epimerase; Identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163; Belongs to the ribulose-phosphate 3-epimerase family.
    
 0.622
CUS_6136
Class II aldolase/adducin N-terminal domain protein; Identified by match to protein family HMM PF00596.
  
 
 0.450
fsa
Fructose-6-phosphate aldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
  
 
 0.445
CUS_6190
Hypothetical protein.
    
 
 0.422
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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