STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_6027Hypothetical protein. (445 aa)    
Predicted Functional Partners:
CUS_6025
Hypothetical protein.
 
    
0.658
CUS_6026
Hypothetical protein; Identified by glimmer; putative.
       0.645
CUS_5255
Dockerin type I repeat protein; Identified by match to protein family HMM PF00404; match to protein family HMM PF02368.
  
  
0.578
CUS_6911
Putative phage head-tail adaptor; Identified by match to protein family HMM PF00404.
  
  
0.578
CUS_7363
Hypothetical protein.
  
  
0.558
CUS_5170
CotH protein; Identified by match to protein family HMM PF08757.
  
   0.520
nifJ
Pyruvate synthase; Identified by match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM TIGR02176.
    
   0.515
CUS_7022
Dockerin type I repeat protein; Identified by match to protein family HMM PF00404; match to protein family HMM PF08757.
  
   0.505
pheT
phenylalanine--tRNA ligase, beta subunit; Identified by match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
   
 
 0.416
CUS_5001
Hypothetical protein.
   
   0.401
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.