STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_6037Hypothetical protein. (220 aa)    
Predicted Functional Partners:
CUS_6038
Hypothetical protein.
       0.596
CUS_6039
Identified by match to protein family HMM PF04073; match to protein family HMM TIGR00011; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.
       0.596
CUS_6562
Aldose 1-epimerase; Identified by match to protein family HMM PF01263.
  
     0.583
CUS_7780
Fibronectin type III domain protein; Identified by match to protein family HMM PF00041.
  
     0.554
CUS_6100
Conserved domain protein.
  
     0.516
CUS_6035
4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037.
 
     0.499
CUS_6391
Identified by match to protein family HMM PF00652; match to protein family HMM PF00657; match to protein family HMM PF03422.
  
     0.491
CUS_7050
Hypothetical protein.
  
     0.487
CUS_6036
Identified by match to protein family HMM PF09365.
       0.471
CUS_6610
GDSL-like protein.
  
     0.448
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.