CUS_6043 protein (Ruminococcus albus 8) - STRING interaction network

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Score

CUS_6043

ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (538 aa)

Predicted Functional Partners:

rpsE

0.884

rplD

0.884

rpsH

0.883

rplU

0.877

rplC

0.877

rpsO

0.876

rpsC

0.875

rplT

0.875

rplM

0.874

rpmA

0.872

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUS_6043	rplC	CUS_6043	CUS_6514	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.877
CUS_6043	rplD	CUS_6043	CUS_6513	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.884
CUS_6043	rplM	CUS_6043	CUS_4949	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.874
CUS_6043	rplT	CUS_6043	CUS_7452	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.875
CUS_6043	rplU	CUS_6043	CUS_5404	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.877
CUS_6043	rpmA	CUS_6043	CUS_5402	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Ribosomal protein L27; Identified by match to protein family HMM PF01016; match to protein family HMM TIGR00062; Belongs to the bacterial ribosomal protein bL27 family.	0.872
CUS_6043	rpsC	CUS_6043	CUS_6508	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.875
CUS_6043	rpsE	CUS_6043	CUS_6497	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.884
CUS_6043	rpsH	CUS_6043	CUS_6500	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.	0.883
CUS_6043	rpsO	CUS_6043	CUS_7481	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.876
rplC	CUS_6043	CUS_6514	CUS_6043	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.877
rplC	rplD	CUS_6514	CUS_6513	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.	0.999
rplC	rplM	CUS_6514	CUS_4949	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
rplC	rplT	CUS_6514	CUS_7452	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.996
rplC	rplU	CUS_6514	CUS_5404	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.996
rplC	rpmA	CUS_6514	CUS_5402	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L27; Identified by match to protein family HMM PF01016; match to protein family HMM TIGR00062; Belongs to the bacterial ribosomal protein bL27 family.	0.997
rplC	rpsC	CUS_6514	CUS_6508	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.998
rplC	rpsE	CUS_6514	CUS_6497	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.998
rplC	rpsH	CUS_6514	CUS_6500	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.	0.998
rplC	rpsO	CUS_6514	CUS_7481	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.997