Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CUS_6116Oxidoreductase, nitrogenase component 1; Identified by match to protein family HMM PF00148; overlaps another CDS with the same product name. (522 aa)    
Predicted Functional Partners:
nifH
Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
 
 0.960
CUS_6115
Oxidoreductase, nitrogenase component 1; Identified by match to protein family HMM PF00148; overlaps another CDS with the same product name.
 
 
0.948
CUS_7930
Putative nitrogenase iron protein; Identified by match to protein family HMM PF00142; Belongs to the NifH/BchL/ChlL family.
 
 0.914
CUS_7933
Putative nitrogenase iron protein; Identified by match to protein family HMM PF00142; Belongs to the NifH/BchL/ChlL family.
 
 0.903
CUS_5278
Dinitrogenase iron-molybdenum cofactor; Identified by match to protein family HMM PF02579.
 
   0.838
CUS_5273
Dinitrogenase iron-molybdenum cofactor; Identified by match to protein family HMM PF02579.
 
   0.831
CUS_5274
Putative nitrogenase cofactor biosynthesis protein NifB; Identified by match to protein family HMM PF04055.
 
  
 0.806
CUS_4695
Oxidoreductase, nitrogenase component 1; Identified by match to protein family HMM PF00148; Belongs to the NifD/NifK/NifE/NifN family.
 
 
0.783
CUS_6118
Identified by match to protein family HMM PF04069; match to protein family HMM PF09084.
 
    0.772
CUS_6117
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
    0.736
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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