CUS_6129 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUS_6129

ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547. (446 aa)

Predicted Functional Partners:

CUS_6131

0.996

CUS_6130

0.924

CUS_5716

0.819

CUS_7042

0.819

CUS_7190

0.819

CUS_7202

0.819

CUS_5880

0.780

CUS_7150

0.739

CUS_7151

0.738

CUS_6465

0.725

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CUS_5716	CUS_5880	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.921
CUS_5716	CUS_6129	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.	0.819
CUS_5716	CUS_6130	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.963
CUS_5716	CUS_6131	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.964
CUS_5716	CUS_6465	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.951
CUS_5716	CUS_7150	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.977
CUS_5716	CUS_7151	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.938
CUS_5880	CUS_5716	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	0.921
CUS_5880	CUS_6129	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.	0.780
CUS_5880	CUS_6130	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.926
CUS_5880	CUS_6465	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.913
CUS_5880	CUS_7042	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.925
CUS_5880	CUS_7150	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.923
CUS_5880	CUS_7190	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.917
CUS_5880	CUS_7202	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	0.918
CUS_6129	CUS_5716	ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	0.819
CUS_6129	CUS_5880	ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.780
CUS_6129	CUS_6130	ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.924
CUS_6129	CUS_6131	ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.996
CUS_6129	CUS_6465	ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.725