CUS_6130 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUS_6130

ABC transporter, permease protein; Identified by match to protein family HMM PF00528. (321 aa)

Predicted Functional Partners:

CUS_6131

0.988

CUS_5716

0.963

CUS_7042

0.963

CUS_7190

0.963

CUS_7202

0.963

CUS_4266

0.950

CUS_6464

0.927

CUS_6469

0.927

CUS_7034

0.927

CUS_7038

0.927

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CUS_4266	CUS_5716	Hypothetical protein.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	0.973
CUS_4266	CUS_6130	Hypothetical protein.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.950
CUS_4266	CUS_7042	Hypothetical protein.	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.976
CUS_4266	CUS_7190	Hypothetical protein.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.973
CUS_4266	CUS_7202	Hypothetical protein.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	0.973
CUS_5716	CUS_4266	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	Hypothetical protein.	0.973
CUS_5716	CUS_6130	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.963
CUS_5716	CUS_6131	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.964
CUS_5716	CUS_6464	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.939
CUS_5716	CUS_6469	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.935
CUS_5716	CUS_7034	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.936
CUS_5716	CUS_7038	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.940
CUS_6130	CUS_4266	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Hypothetical protein.	0.950
CUS_6130	CUS_5716	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF03459; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.	0.963
CUS_6130	CUS_6131	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.988
CUS_6130	CUS_6464	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.927
CUS_6130	CUS_6469	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.927
CUS_6130	CUS_7034	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.927
CUS_6130	CUS_7038	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.927
CUS_6130	CUS_7042	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.963