rpoD protein (Ruminococcus albus 8) - STRING interaction network

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rpoD

RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (366 aa)

Predicted Functional Partners:

rpoB

0.965

rpoC

0.958

rpoA

0.957

CUS_7805

0.953

dnaG

0.936

CUS_5811

0.918

CUS_7061

0.899

CUS_7692

0.879

nusA

0.854

CUS_4742

0.845

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUS_4742	dnaG	CUS_4742	CUS_6159	Putative DNA primase; Identified by match to protein family HMM PF01751; match to protein family HMM PF08275.	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	0.611
CUS_4742	nusA	CUS_4742	CUS_7306	Putative DNA primase; Identified by match to protein family HMM PF01751; match to protein family HMM PF08275.	Transcription termination factor NusA; Participates in both transcription termination and antitermination.	0.648
CUS_4742	rpoB	CUS_4742	CUS_7658	Putative DNA primase; Identified by match to protein family HMM PF01751; match to protein family HMM PF08275.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.478
CUS_4742	rpoC	CUS_4742	CUS_7659	Putative DNA primase; Identified by match to protein family HMM PF01751; match to protein family HMM PF08275.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.576
CUS_4742	rpoD	CUS_4742	CUS_6158	Putative DNA primase; Identified by match to protein family HMM PF01751; match to protein family HMM PF08275.	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.845
CUS_5811	CUS_7061	CUS_5811	CUS_7061	Putative DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	CarD-like protein.	0.927
CUS_5811	CUS_7692	CUS_5811	CUS_7692	Putative DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF00990.	0.907
CUS_5811	CUS_7805	CUS_5811	CUS_7805	Putative DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	Transcriptional regulator, MerR family; Identified by match to protein family HMM PF00376.	0.938
CUS_5811	nusA	CUS_5811	CUS_7306	Putative DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	Transcription termination factor NusA; Participates in both transcription termination and antitermination.	0.940
CUS_5811	rpoA	CUS_5811	CUS_6485	Putative DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	RNA polymerase, alpha subunit C-terminal domain protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
CUS_5811	rpoB	CUS_5811	CUS_7658	Putative DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
CUS_5811	rpoC	CUS_5811	CUS_7659	Putative DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
CUS_5811	rpoD	CUS_5811	CUS_6158	Putative DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.918
CUS_7061	CUS_5811	CUS_7061	CUS_5811	CarD-like protein.	Putative DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.927
CUS_7061	rpoA	CUS_7061	CUS_6485	CarD-like protein.	RNA polymerase, alpha subunit C-terminal domain protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.922
CUS_7061	rpoB	CUS_7061	CUS_7658	CarD-like protein.	DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.935
CUS_7061	rpoC	CUS_7061	CUS_7659	CarD-like protein.	DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.930
CUS_7061	rpoD	CUS_7061	CUS_6158	CarD-like protein.	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.899
CUS_7692	CUS_5811	CUS_7692	CUS_5811	Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF00990.	Putative DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.907
CUS_7692	rpoA	CUS_7692	CUS_6485	Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF00990.	RNA polymerase, alpha subunit C-terminal domain protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.938

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