STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_6167Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092. (549 aa)    
Predicted Functional Partners:
CUS_6166
Putative lipoprotein.
       0.689
CUS_6164
Sigma-70, region 4; Identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.688
CUS_6168
Hypothetical protein; Identified by glimmer; putative.
       0.664
CUS_6165
Conserved domain protein.
       0.645
CUS_4472
Hypothetical protein; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
     0.535
CUS_5966
Putative stage II sporulation protein E; Identified by match to protein family HMM PF07228.
  
    0.534
CUS_7758
GumN protein; Identified by match to protein family HMM PF07446.
  
     0.461
CUS_6169
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
       0.414
CUS_6170
Hypothetical protein.
       0.414
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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