STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_6181Transcriptional regulator, TetR family. (101 aa)    
Predicted Functional Partners:
CUS_6179
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
 
     0.905
glgB-2
1,4-alpha-glucan branching enzyme; Identified by match to protein family HMM PF00128; match to protein family HMM PF02806; match to protein family HMM PF02922; match to protein family HMM TIGR01515.
       0.544
CUS_6180
Hypothetical protein; Identified by glimmer; putative.
       0.544
CUS_7537
Hypothetical protein; Identified by glimmer; putative.
  
     0.465
CUS_4425
4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037.
  
     0.433
CUS_6800
Transporter, major facilitator family protein.
  
     0.430
CUS_7550
Hypothetical protein; Identified by glimmer; putative.
  
     0.420
CUS_5482
Hypothetical protein.
  
     0.414
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.