STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_6191CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517. (196 aa)    
Predicted Functional Partners:
CUS_6193
Identified by match to protein family HMM PF02698.
 
     0.518
CUS_7780
Fibronectin type III domain protein; Identified by match to protein family HMM PF00041.
  
     0.486
CUS_6192
Conserved domain protein.
       0.483
CUS_5322
Fibronectin type III domain protein; Identified by match to protein family HMM PF00041; match to protein family HMM TIGR02167.
  
     0.481
CUS_7324
CotH protein; Identified by match to protein family HMM PF08757.
  
 
   0.471
CUS_5774
CotH protein; Identified by match to protein family HMM PF08757.
  
 
   0.469
CUS_5760
Bacterial surface protein 26-residue PARCEL repeat (3 repeats); Identified by match to protein family HMM TIGR02167.
  
     0.442
CUS_6393
Fibronectin type III domain protein; Identified by match to protein family HMM PF00041; match to protein family HMM TIGR02167.
  
     0.440
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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