Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CUS_6223Hypothetical protein; Identified by glimmer; putative. (42 aa)    
Predicted Functional Partners:
guaA
GMP synthase (glutamine-hydrolyzing), C-terminal domain protein; Catalyzes the synthesis of GMP from XMP.
    
 0.850
CUS_4675
SH3 domain protein; Identified by match to protein family HMM PF01551; match to protein family HMM PF08239.
    
 0.826
CUS_6222
Sigma-70 region 2; Identified by match to protein family HMM PF04542; Belongs to the sigma-70 factor family.
       0.773
CUS_4678
Hypothetical protein; Identified by glimmer; putative.
   
 
 0.758
CUS_4767
Ankyrin repeat protein; Identified by match to protein family HMM PF00023.
    
 0.699
CUS_5670
Identified by match to protein family HMM PF08929.
    
 0.699
CUS_6221
RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM TIGR02937.
     
 0.517
CUS_6220
Hypothetical protein; Identified by glimmer; putative.
       0.511
CUS_4846
Identified by match to protein family HMM PF01569.
    
 0.428
gpsA
Glycerol-3-phosphate dehydrogenase [NAD(P)+]; Identified by match to protein family HMM PF01210; match to protein family HMM PF02558; match to protein family HMM PF03721; match to protein family HMM PF07479; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
    
  0.422
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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