STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_6246Conserved domain protein. (184 aa)    
Predicted Functional Partners:
CUS_6247
Conserved domain protein.
 
     0.911
CUS_6245
Putative alginate O-acetyltransferase AlgI; Identified by match to protein family HMM PF03062; Belongs to the membrane-bound acyltransferase family.
 
     0.803
CUS_6244
Acetyltransferase, GNAT family protein.
       0.773
CUS_6242
Hypothetical protein; Identified by glimmer; putative.
       0.628
CUS_6243
Hypothetical protein; Identified by glimmer; putative.
       0.628
CUS_5546
Conserved domain protein.
  
     0.507
CUS_5706
Conserved domain protein.
  
     0.502
CUS_5248
CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.
  
     0.497
proS
proline--tRNA ligase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro).
       0.493
CUS_7329
Hypothetical protein.
 
     0.445
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.