STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_6275FMN-binding domain protein; Identified by match to protein family HMM PF04205. (493 aa)    
Predicted Functional Partners:
CUS_5662
Fibronectin type III domain protein; Identified by match to protein family HMM PF00041.
  
     0.517
CUS_4579
Hypothetical protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error; identified by glimmer; putative.
  
     0.494
CUS_5603
Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753.
  
     0.494
CUS_7882
Signal peptidase I; Identified by match to protein family HMM PF00717; match to protein family HMM TIGR02228.
  
     0.478
CUS_8106
Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.
 
     0.435
CUS_5414
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
  
     0.430
CUS_5057
Hypothetical protein.
  
     0.420
CUS_5056
Hypothetical protein.
  
     0.412
CUS_6274
Methyltransferase domain protein; Identified by match to protein family HMM PF00248; match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242.
       0.406
CUS_7862
Putative membrane protein.
  
     0.404
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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