STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_6296Dockerin type I repeat protein; Identified by match to protein family HMM PF00404; match to protein family HMM PF07470. (531 aa)    
Predicted Functional Partners:
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.788
CUS_7193
Polygalacturonase (pectinase); Identified by match to protein family HMM PF00295; Belongs to the glycosyl hydrolase 28 family.
     0.787
CUS_7181
Pectinesterase; Identified by match to protein family HMM PF01095.
 
     0.778
CUS_6392
Hypothetical protein; Identified by glimmer; putative.
 
  
  0.772
CUS_5047
Pectinesterase; Identified by match to protein family HMM PF01095.
 
     0.747
pelA
Pectate lyase; Identified by match to protein family HMM PF01095; match to protein family HMM PF09492; match to protein family HMM TIGR02474.
 
     0.737
CUS_7200
Identified by match to protein family HMM PF01261.
 
    0.736
CUS_6391
Identified by match to protein family HMM PF00652; match to protein family HMM PF00657; match to protein family HMM PF03422.
  
  
  0.570
CUS_5611
Fibronectin type III domain protein; Identified by match to protein family HMM PF00041.
 
   
 0.547
kduD
2-deoxy-D-gluconate 3-dehydrogenase; Identified by match to protein family HMM PF00106; match to protein family HMM TIGR01832.
  
     0.541
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.