STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_6305Hypothetical protein; Identified by glimmer; putative. (549 aa)    
Predicted Functional Partners:
cas6
CRISPR-associated endoribonuclease Cas6; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA).
       0.773
CUS_5297
Ricin-type beta-trefoil lectin domain protein; Identified by match to protein family HMM PF00652.
   
   0.630
CUS_5824
Fibronectin type III domain protein; Identified by match to protein family HMM PF00041; match to protein family HMM TIGR03804.
   
   0.630
CUS_6591
Putative membrane protein.
   
   0.630
CUS_6781
Hypothetical protein.
   
   0.630
CUS_7193
Polygalacturonase (pectinase); Identified by match to protein family HMM PF00295; Belongs to the glycosyl hydrolase 28 family.
   
   0.630
CUS_7217
Conserved domain protein.
   
   0.630
CUS_7540
Hypothetical protein; Identified by glimmer; putative.
   
   0.630
CUS_7666
Dockerin type I repeat protein.
   
   0.630
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.