STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_6314Asparagine synthase; Identified by match to protein family HMM PF00733. (582 aa)    
Predicted Functional Partners:
CUS_6312
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
       0.773
CUS_6313
Hypothetical protein.
       0.773
CUS_4363
Hypothetical protein; Identified by glimmer; putative.
  
     0.691
CUS_5719
Hypothetical protein; Identified by glimmer; putative.
  
     0.636
CUS_5645
Beta-ketoacyl synthase, N-terminal domain protein; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801.
 
 
 0.625
CUS_8014
Peptidase, M48 family; Identified by match to protein family HMM PF01435.
  
     0.503
CUS_8076
Putative cellulose 1,4-beta-cellobiosidase; Identified by match to protein family HMM PF02011.
  
     0.481
CUS_7760
Putative aspartate kinase; Identified by match to protein family HMM PF01842; Belongs to the aspartokinase family.
  
 
 0.477
CUS_6386
Cellulase (glycosyl hydrolase family 5); Identified by match to protein family HMM PF00150; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.418
glyS
glycine--tRNA ligase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family.
   
   0.406
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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