Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_6314Asparagine synthase; Identified by match to protein family HMM PF00733. (582 aa)    
Predicted Functional Partners:
CUS_6312
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
       0.773
CUS_6313
Hypothetical protein.
       0.773
CUS_4363
Hypothetical protein; Identified by glimmer; putative.
  
     0.691
CUS_5719
Hypothetical protein; Identified by glimmer; putative.
  
     0.636
CUS_5645
Beta-ketoacyl synthase, N-terminal domain protein; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801.
 
 
 0.510
CUS_8014
Peptidase, M48 family; Identified by match to protein family HMM PF01435.
  
     0.503
CUS_8076
Putative cellulose 1,4-beta-cellobiosidase; Identified by match to protein family HMM PF02011.
  
     0.481
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. Belongs to the diaminopimelate epimerase family.
    
 0.467
CUS_7760
Putative aspartate kinase; Identified by match to protein family HMM PF01842; Belongs to the aspartokinase family.
  
 
 0.465
CUS_6386
Cellulase (glycosyl hydrolase family 5); Identified by match to protein family HMM PF00150; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.418
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
Server load: low (14%) [HD]