Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CUS_6317Putative bacitracin ABC transporter, ATP-binding protein BcrA; Identified by match to protein family HMM PF00005. (237 aa)    
Predicted Functional Partners:
CUS_6316
Putative membrane protein.
       0.778
CUS_6315
Putative membrane protein.
       0.777
CUS_4702
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
     0.611
CUS_6318
LytTr DNA-binding domain protein; Identified by match to protein family HMM PF04397.
       0.508
CUS_6319
Hypothetical protein; Identified by glimmer; putative.
       0.501
CUS_7293
ABC-2 type transporter; Identified by match to protein family HMM PF01061.
  
  0.482
CUS_8074
Putative membrane protein.
  
  0.476
CUS_7202
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08402; Belongs to the ABC transporter superfamily.
 
   
 
0.415
aspS
Nucleic acid-binding domain protein; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 2 subfamily.
  
 
   0.407
CUS_5422
Conserved domain protein; Overlaps another CDS with the same product name.
   
  0.403
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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