Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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CUS_6320Putative stage V sporulation protein T; Identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439. (178 aa)    
Predicted Functional Partners:
spoIIID
Stage III sporulation protein D.
  
  
 0.859
CUS_5966
Putative stage II sporulation protein E; Identified by match to protein family HMM PF07228.
 
   
 0.833
spoVAD
Stage V sporulation protein AD; Identified by match to protein family HMM PF07451.
  
   
 0.826
CUS_7806
Putative stage III sporulation protein AA.
  
   
 0.820
sigK
RNA polymerase sigma-K factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
   
 0.815
CUS_5685
Sporulation initiation factor Spo0A C-terminal domain protein; Identified by match to protein family HMM PF08769.
  
   
 0.796
spoIVA
Stage IV sporulation protein A; Identified by match to protein family HMM PF09547; match to protein family HMM TIGR02836.
  
  
 0.794
CUS_6796
Putative RNA polymerase sigma-G factor; Identified by match to protein family HMM PF04539; match to protein family HMM PF04545; match to protein family HMM PF08281.
  
   
 0.788
yabP
Sporulation protein YabP; Identified by match to protein family HMM PF07873; match to protein family HMM TIGR02892.
 
     0.788
CUS_4878
Putative sporulation transcription factor Spo0A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.
  
   
 0.784
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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