STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xyl43ARicin-type beta-trefoil lectin domain protein; Identified by match to protein family HMM PF00652. (917 aa)    
Predicted Functional Partners:
xyn10B
Glycosyl hydrolase family 10; Identified by match to protein family HMM PF00041; match to protein family HMM PF00331; match to protein family HMM PF02018.
 
  
 0.891
CUS_4654
Putative esterase; Identified by match to protein family HMM PF00756.
 
  
 0.773
CUS_5679
Carbohydrate binding domain protein; Identified by match to protein family HMM PF02018; match to protein family HMM PF03422; match to protein family HMM PF04616.
  
   
 0.749
ganB
Arabinogalactan endo-1,4-beta-galactosidase; Identified by match to protein family HMM PF07745.
  
  
 0.740
ara43A
Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.738
xyn11F
Carbohydrate binding domain protein; Identified by match to protein family HMM PF00457; match to protein family HMM PF02018; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
  
  0.675
CUS_6392
Hypothetical protein; Identified by glimmer; putative.
 
  
  0.675
CUS_5667
Glycosyl hydrolase family 10; Identified by match to protein family HMM PF00331; match to protein family HMM PF02018.
  
  
  0.674
CUS_5681
Mannan endo-1,4-beta-mannosidase domain protein; Identified by match to protein family HMM PF02156; Belongs to the glycosyl hydrolase 26 family.
  
     0.670
CUS_8160
FG-GAP repeat protein; Identified by match to protein family HMM PF00041.
  
 
  0.669
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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