STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_6340Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534. (387 aa)    
Predicted Functional Partners:
CUS_8023
Hypothetical protein.
    
 
 0.826
CUS_6335
Putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883.
  
 
 0.795
CUS_6339
Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
     0.781
CUS_6341
Glycosyltransferase, group 2 family protein; Identified by match to protein family HMM PF00535.
  
  
 0.731
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.698
glgB-2
1,4-alpha-glucan branching enzyme; Identified by match to protein family HMM PF00128; match to protein family HMM PF02806; match to protein family HMM PF02922; match to protein family HMM TIGR01515.
   
 0.698
CUS_6342
Glycosyltransferase, group 2 family protein; Identified by match to protein family HMM PF00535.
  
 
  0.667
CUS_4806
Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
     0.648
malQ
4-alpha-glucanotransferase; Identified by match to protein family HMM PF02446; match to protein family HMM TIGR00217.
     
 0.648
CUS_6338
4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037.
       0.645
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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