Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CUS_6341Glycosyltransferase, group 2 family protein; Identified by match to protein family HMM PF00535. (272 aa)    
Predicted Functional Partners:
CUS_6340
Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534.
  
  
 0.731
CUS_6342
Glycosyltransferase, group 2 family protein; Identified by match to protein family HMM PF00535.
  
 
 0.719
CUS_6339
Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534.
  
  
 0.693
CUS_6335
Putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883.
  
  
 0.675
CUS_6338
4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037.
       0.613
CUS_6337
Hypothetical protein.
       0.588
CUS_6336
Bacterial sugar transferase; Identified by match to protein family HMM PF02397.
  
 
 0.587
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
 
  
 0.581
rfbD
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
  
 0.557
CUS_6867
Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719.
  
 
 0.524
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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