CUS_6341 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUS_6341

Glycosyltransferase, group 2 family protein; Identified by match to protein family HMM PF00535. (272 aa)

Predicted Functional Partners:

CUS_6335

0.733

CUS_6340

0.731

CUS_6342

0.704

CUS_6339

0.694

CUS_6867

0.636

CUS_6338

0.612

CUS_6336

0.601

CUS_6337

0.588

rfbC

0.564

rfbD

0.529

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUS_6335	CUS_6336	CUS_6335	CUS_6336	Putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883.	Bacterial sugar transferase; Identified by match to protein family HMM PF02397.	0.935
CUS_6335	CUS_6339	CUS_6335	CUS_6339	Putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883.	Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534.	0.795
CUS_6335	CUS_6340	CUS_6335	CUS_6340	Putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883.	Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534.	0.795
CUS_6335	CUS_6341	CUS_6335	CUS_6341	Putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883.	Glycosyltransferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.733
CUS_6335	CUS_6867	CUS_6335	CUS_6867	Putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883.	Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719.	0.952
CUS_6335	rfbC	CUS_6335	CUS_6328	Putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883.	dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.	0.837
CUS_6335	rfbD	CUS_6335	CUS_6326	Putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883.	dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.	0.781
CUS_6336	CUS_6335	CUS_6336	CUS_6335	Bacterial sugar transferase; Identified by match to protein family HMM PF02397.	Putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883.	0.935
CUS_6336	CUS_6337	CUS_6336	CUS_6337	Bacterial sugar transferase; Identified by match to protein family HMM PF02397.	Hypothetical protein.	0.501
CUS_6336	CUS_6338	CUS_6336	CUS_6338	Bacterial sugar transferase; Identified by match to protein family HMM PF02397.	4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037.	0.465
CUS_6336	CUS_6339	CUS_6336	CUS_6339	Bacterial sugar transferase; Identified by match to protein family HMM PF02397.	Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534.	0.492
CUS_6336	CUS_6340	CUS_6336	CUS_6340	Bacterial sugar transferase; Identified by match to protein family HMM PF02397.	Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534.	0.611
CUS_6336	CUS_6341	CUS_6336	CUS_6341	Bacterial sugar transferase; Identified by match to protein family HMM PF02397.	Glycosyltransferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.601
CUS_6336	CUS_6342	CUS_6336	CUS_6342	Bacterial sugar transferase; Identified by match to protein family HMM PF02397.	Glycosyltransferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.404
CUS_6336	CUS_6867	CUS_6336	CUS_6867	Bacterial sugar transferase; Identified by match to protein family HMM PF02397.	Polysaccharide biosynthesis protein; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719.	0.409
CUS_6337	CUS_6336	CUS_6337	CUS_6336	Hypothetical protein.	Bacterial sugar transferase; Identified by match to protein family HMM PF02397.	0.501
CUS_6337	CUS_6338	CUS_6337	CUS_6338	Hypothetical protein.	4Fe-4S binding domain protein; Identified by match to protein family HMM PF00037.	0.990
CUS_6337	CUS_6339	CUS_6337	CUS_6339	Hypothetical protein.	Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534.	0.651
CUS_6337	CUS_6340	CUS_6337	CUS_6340	Hypothetical protein.	Glycosyltransferase, group 1 family protein; Identified by match to protein family HMM PF00534.	0.619
CUS_6337	CUS_6341	CUS_6337	CUS_6341	Hypothetical protein.	Glycosyltransferase, group 2 family protein; Identified by match to protein family HMM PF00535.	0.588