STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_6359Identified by match to protein family HMM PF00266; match to protein family HMM TIGR01977. (382 aa)    
Predicted Functional Partners:
CUS_7176
SUF system FeS assembly protein, NifU family; Identified by match to protein family HMM PF01592; match to protein family HMM TIGR01994.
 
 0.969
CUS_7253
Hypothetical protein.
  
 0.942
CUS_6356
Phosphoadenosine phosphosulfate reductase family protein; Identified by match to protein family HMM PF01507.
  
  0.914
CUS_6358
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
 
     0.900
CUS_6357
Hypothetical protein.
 
     0.873
CUS_7174
SufB/sufD domain protein; Identified by match to protein family HMM PF01458.
 
 0.870
sufB
FeS assembly protein SufB; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980.
 
 
 0.854
sufC
FeS assembly ATPase SufC.
 
  
 0.833
CUS_6360
Helicase C-terminal domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851.
 
     0.803
CUS_6945
SufB/sufD domain protein; Identified by match to protein family HMM PF01458.
  
 
 0.686
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
Server load: low (28%) [HD]