CUS_6362 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CUS_6362

Putative DNA sulfur modification protein DndD. (676 aa)

Predicted Functional Partners:

polA

0.949

sbcD

0.932

CUS_6360

0.903

CUS_6358

0.887

CUS_6357

0.876

CUS_6356

0.869

CUS_6363

0.818

recQ

0.784

CUS_6359

0.635

frr

0.617

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUS_6356	CUS_6357	CUS_6356	CUS_6357	Phosphoadenosine phosphosulfate reductase family protein; Identified by match to protein family HMM PF01507.	Hypothetical protein.	0.957
CUS_6356	CUS_6358	CUS_6356	CUS_6358	Phosphoadenosine phosphosulfate reductase family protein; Identified by match to protein family HMM PF01507.	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	0.947
CUS_6356	CUS_6359	CUS_6356	CUS_6359	Phosphoadenosine phosphosulfate reductase family protein; Identified by match to protein family HMM PF01507.	Identified by match to protein family HMM PF00266; match to protein family HMM TIGR01977.	0.908
CUS_6356	CUS_6360	CUS_6356	CUS_6360	Phosphoadenosine phosphosulfate reductase family protein; Identified by match to protein family HMM PF01507.	Helicase C-terminal domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851.	0.913
CUS_6356	CUS_6362	CUS_6356	CUS_6362	Phosphoadenosine phosphosulfate reductase family protein; Identified by match to protein family HMM PF01507.	Putative DNA sulfur modification protein DndD.	0.869
CUS_6356	CUS_6363	CUS_6356	CUS_6363	Phosphoadenosine phosphosulfate reductase family protein; Identified by match to protein family HMM PF01507.	Hypothetical protein.	0.486
CUS_6357	CUS_6356	CUS_6357	CUS_6356	Hypothetical protein.	Phosphoadenosine phosphosulfate reductase family protein; Identified by match to protein family HMM PF01507.	0.957
CUS_6357	CUS_6358	CUS_6357	CUS_6358	Hypothetical protein.	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	0.947
CUS_6357	CUS_6359	CUS_6357	CUS_6359	Hypothetical protein.	Identified by match to protein family HMM PF00266; match to protein family HMM TIGR01977.	0.873
CUS_6357	CUS_6360	CUS_6357	CUS_6360	Hypothetical protein.	Helicase C-terminal domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851.	0.923
CUS_6357	CUS_6362	CUS_6357	CUS_6362	Hypothetical protein.	Putative DNA sulfur modification protein DndD.	0.876
CUS_6357	CUS_6363	CUS_6357	CUS_6363	Hypothetical protein.	Hypothetical protein.	0.494
CUS_6358	CUS_6356	CUS_6358	CUS_6356	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Phosphoadenosine phosphosulfate reductase family protein; Identified by match to protein family HMM PF01507.	0.947
CUS_6358	CUS_6357	CUS_6358	CUS_6357	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Hypothetical protein.	0.947
CUS_6358	CUS_6359	CUS_6358	CUS_6359	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Identified by match to protein family HMM PF00266; match to protein family HMM TIGR01977.	0.900
CUS_6358	CUS_6360	CUS_6358	CUS_6360	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Helicase C-terminal domain protein; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851.	0.935
CUS_6358	CUS_6362	CUS_6358	CUS_6362	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Putative DNA sulfur modification protein DndD.	0.887
CUS_6358	CUS_6363	CUS_6358	CUS_6363	Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.	Hypothetical protein.	0.540
CUS_6359	CUS_6356	CUS_6359	CUS_6356	Identified by match to protein family HMM PF00266; match to protein family HMM TIGR01977.	Phosphoadenosine phosphosulfate reductase family protein; Identified by match to protein family HMM PF01507.	0.908
CUS_6359	CUS_6357	CUS_6359	CUS_6357	Identified by match to protein family HMM PF00266; match to protein family HMM TIGR01977.	Hypothetical protein.	0.873