STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_6392Hypothetical protein; Identified by glimmer; putative. (839 aa)    
Predicted Functional Partners:
CUS_7193
Polygalacturonase (pectinase); Identified by match to protein family HMM PF00295; Belongs to the glycosyl hydrolase 28 family.
 
 
 0.894
pelA
Pectate lyase; Identified by match to protein family HMM PF01095; match to protein family HMM PF09492; match to protein family HMM TIGR02474.
 
  
 0.869
CUS_7181
Pectinesterase; Identified by match to protein family HMM PF01095.
 
  
 0.867
CUS_5047
Pectinesterase; Identified by match to protein family HMM PF01095.
 
  
 0.862
CUS_5297
Ricin-type beta-trefoil lectin domain protein; Identified by match to protein family HMM PF00652.
 
 
 0.861
CUS_5645
Beta-ketoacyl synthase, N-terminal domain protein; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801.
  
 
 0.860
ara51a
Alpha-L-arabinofuranosidase C-terminal domain protein; Identified by match to protein family HMM PF06964.
 
  
 0.855
CUS_5001
Hypothetical protein.
 
 
  0.846
CUS_6446
Hypothetical protein.
 
 
  0.843
CUS_4654
Putative esterase; Identified by match to protein family HMM PF00756.
 
  
 0.823
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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