Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CUS_6392Hypothetical protein; Identified by glimmer; putative. (839 aa)    
Predicted Functional Partners:
pelA
Pectate lyase; Identified by match to protein family HMM PF01095; match to protein family HMM PF09492; match to protein family HMM TIGR02474.
 
  
 0.877
CUS_7181
Pectinesterase; Identified by match to protein family HMM PF01095.
 
  
 0.875
CUS_7193
Polygalacturonase (pectinase); Identified by match to protein family HMM PF00295; Belongs to the glycosyl hydrolase 28 family.
 
 0.873
CUS_5047
Pectinesterase; Identified by match to protein family HMM PF01095.
 
  
 0.870
CUS_5297
Ricin-type beta-trefoil lectin domain protein; Identified by match to protein family HMM PF00652.
 
 0.833
CUS_5001
Hypothetical protein.
 
 
  0.793
CUS_7029
Glycosyl hydrolase, family 43; Identified by match to protein family HMM PF04616; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.791
CUS_5264
Glycosyl hydrolase family 10; Identified by match to protein family HMM PF00331.
  
 
   0.790
CUS_5667
Glycosyl hydrolase family 10; Identified by match to protein family HMM PF00331; match to protein family HMM PF02018.
  
 
   0.790
CUS_6446
Hypothetical protein.
 
 
  0.789
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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