CUS_6394 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUS_6394

Dockerin type I repeat protein; Identified by match to protein family HMM PF00404. (642 aa)

Predicted Functional Partners:

CUS_5173

0.976

CUS_5133

0.891

CUS_5171

0.891

CUS_5506

0.891

CUS_5786

0.891

CUS_7283

0.891

CUS_6686

0.817

CUS_5503

0.727

CUS_7471

0.727

CUS_7752

0.646

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CUS_5133	CUS_5503	Efflux transporter, RND family, MFP subunit.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.789
CUS_5133	CUS_6394	Efflux transporter, RND family, MFP subunit.	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.	0.891
CUS_5133	CUS_7471	Efflux transporter, RND family, MFP subunit.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687; match to protein family HMM PF06696.	0.789
CUS_5133	CUS_7752	Efflux transporter, RND family, MFP subunit.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.770
CUS_5171	CUS_5173	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730.	Conserved domain protein.	0.876
CUS_5171	CUS_5503	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.789
CUS_5171	CUS_6394	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730.	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.	0.891
CUS_5171	CUS_7471	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687; match to protein family HMM PF06696.	0.789
CUS_5171	CUS_7752	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.770
CUS_5173	CUS_5171	Conserved domain protein.	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730.	0.876
CUS_5173	CUS_5503	Conserved domain protein.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.781
CUS_5173	CUS_6394	Conserved domain protein.	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.	0.976
CUS_5173	CUS_7471	Conserved domain protein.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687; match to protein family HMM PF06696.	0.781
CUS_5173	CUS_7752	Conserved domain protein.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.662
CUS_5503	CUS_5133	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Efflux transporter, RND family, MFP subunit.	0.789
CUS_5503	CUS_5171	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730.	0.789
CUS_5503	CUS_5173	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Conserved domain protein.	0.781
CUS_5503	CUS_5506	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730.	0.836
CUS_5503	CUS_5786	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Conserved domain protein.	0.789
CUS_5503	CUS_6394	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.	0.727