CUS_6411 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUS_6411

ACT domain protein; Identified by match to protein family HMM PF01842. (148 aa)

Predicted Functional Partners:

CUS_7361

0.924

CUS_4464

0.887

CUS_6412

0.725

thrC

0.549

thrB

0.471

asd

0.455

CUS_5391

0.445

thrH

0.408

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUS_4464	CUS_5391	CUS_4464	CUS_5391	Prephenate dehydrogenase; Identified by match to protein family HMM PF02153; match to protein family HMM PF03446.	Putative branched-chain-amino-acid aminotransferase 2.	0.487
CUS_4464	CUS_6411	CUS_4464	CUS_6411	Prephenate dehydrogenase; Identified by match to protein family HMM PF02153; match to protein family HMM PF03446.	ACT domain protein; Identified by match to protein family HMM PF01842.	0.887
CUS_4464	CUS_6412	CUS_4464	CUS_6412	Prephenate dehydrogenase; Identified by match to protein family HMM PF02153; match to protein family HMM PF03446.	Homoserine dehydrogenase; Identified by match to protein family HMM PF00742; match to protein family HMM PF03447.	0.450
CUS_4464	CUS_7361	CUS_4464	CUS_7361	Prephenate dehydrogenase; Identified by match to protein family HMM PF02153; match to protein family HMM PF03446.	Prephenate dehydratase; Identified by match to protein family HMM PF00800; match to protein family HMM PF01817.	0.984
CUS_5391	CUS_4464	CUS_5391	CUS_4464	Putative branched-chain-amino-acid aminotransferase 2.	Prephenate dehydrogenase; Identified by match to protein family HMM PF02153; match to protein family HMM PF03446.	0.487
CUS_5391	CUS_6411	CUS_5391	CUS_6411	Putative branched-chain-amino-acid aminotransferase 2.	ACT domain protein; Identified by match to protein family HMM PF01842.	0.445
CUS_5391	CUS_6412	CUS_5391	CUS_6412	Putative branched-chain-amino-acid aminotransferase 2.	Homoserine dehydrogenase; Identified by match to protein family HMM PF00742; match to protein family HMM PF03447.	0.942
CUS_5391	CUS_7361	CUS_5391	CUS_7361	Putative branched-chain-amino-acid aminotransferase 2.	Prephenate dehydratase; Identified by match to protein family HMM PF00800; match to protein family HMM PF01817.	0.965
CUS_5391	thrB	CUS_5391	CUS_6282	Putative branched-chain-amino-acid aminotransferase 2.	Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.	0.828
CUS_5391	thrC	CUS_5391	CUS_7799	Putative branched-chain-amino-acid aminotransferase 2.	Threonine synthase; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR00260.	0.609
CUS_5391	thrH	CUS_5391	CUS_6866	Putative branched-chain-amino-acid aminotransferase 2.	Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR02137.	0.903
CUS_6411	CUS_4464	CUS_6411	CUS_4464	ACT domain protein; Identified by match to protein family HMM PF01842.	Prephenate dehydrogenase; Identified by match to protein family HMM PF02153; match to protein family HMM PF03446.	0.887
CUS_6411	CUS_5391	CUS_6411	CUS_5391	ACT domain protein; Identified by match to protein family HMM PF01842.	Putative branched-chain-amino-acid aminotransferase 2.	0.445
CUS_6411	CUS_6412	CUS_6411	CUS_6412	ACT domain protein; Identified by match to protein family HMM PF01842.	Homoserine dehydrogenase; Identified by match to protein family HMM PF00742; match to protein family HMM PF03447.	0.725
CUS_6411	CUS_7361	CUS_6411	CUS_7361	ACT domain protein; Identified by match to protein family HMM PF01842.	Prephenate dehydratase; Identified by match to protein family HMM PF00800; match to protein family HMM PF01817.	0.924
CUS_6411	asd	CUS_6411	CUS_6204	ACT domain protein; Identified by match to protein family HMM PF01842.	Aspartate-semialdehyde dehydrogenase; Identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR00978; Belongs to the aspartate-semialdehyde dehydrogenase family.	0.455
CUS_6411	thrB	CUS_6411	CUS_6282	ACT domain protein; Identified by match to protein family HMM PF01842.	Homoserine kinase; Catalyzes the ATP-dependent phosphorylation of L-homoserine to L-homoserine phosphate; Belongs to the GHMP kinase family. Homoserine kinase subfamily.	0.471
CUS_6411	thrC	CUS_6411	CUS_7799	ACT domain protein; Identified by match to protein family HMM PF01842.	Threonine synthase; Identified by match to protein family HMM PF00291; match to protein family HMM TIGR00260.	0.549
CUS_6411	thrH	CUS_6411	CUS_6866	ACT domain protein; Identified by match to protein family HMM PF01842.	Phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR02137.	0.408
CUS_6412	CUS_4464	CUS_6412	CUS_4464	Homoserine dehydrogenase; Identified by match to protein family HMM PF00742; match to protein family HMM PF03447.	Prephenate dehydrogenase; Identified by match to protein family HMM PF02153; match to protein family HMM PF03446.	0.450