CUS_6468 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUS_6468

Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF01436; match to protein family HMM PF07719. (533 aa)

Predicted Functional Partners:

CUS_6467

0.992

CUS_6466

0.936

CUS_6465

0.923

CUS_6471

0.898

CUS_6470

0.896

CUS_6464

0.848

CUS_6469

0.846

CUS_7036

0.783

CUS_7032

0.778

CUS_6676

0.770

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CUS_6464	CUS_6465	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.981
CUS_6464	CUS_6466	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Conserved domain protein.	0.878
CUS_6464	CUS_6467	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Conserved domain protein.	0.851
CUS_6464	CUS_6468	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF01436; match to protein family HMM PF07719.	0.848
CUS_6464	CUS_6469	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.967
CUS_6464	CUS_6470	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.964
CUS_6464	CUS_6471	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.	0.908
CUS_6464	CUS_6676	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.	0.718
CUS_6464	CUS_7032	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.	0.774
CUS_6465	CUS_6464	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.981
CUS_6465	CUS_6466	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Conserved domain protein.	0.938
CUS_6465	CUS_6467	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Conserved domain protein.	0.924
CUS_6465	CUS_6468	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF01436; match to protein family HMM PF07719.	0.923
CUS_6465	CUS_6469	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.968
CUS_6465	CUS_6470	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.988
CUS_6465	CUS_6471	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.	0.949
CUS_6465	CUS_6676	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.	0.817
CUS_6465	CUS_7032	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.	0.881
CUS_6465	CUS_7036	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	Conserved domain protein.	0.672
CUS_6466	CUS_6464	Conserved domain protein.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.878

page 1 of 6

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About