CUS_6472 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CUS_6472

Putative lipoprotein ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (312 aa)

Predicted Functional Partners:

CUS_7246

0.872

CUS_5503

0.868

CUS_7471

0.868

CUS_7752

0.862

CUS_7286

0.853

CUS_5508

0.831

CUS_5174

0.806

CUS_6473

0.801

CUS_8075

0.719

CUS_7283

0.710

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CUS_5174	CUS_6472	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Putative lipoprotein ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.806
CUS_5174	CUS_6473	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.897
CUS_5174	CUS_7283	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730.	0.660
CUS_5503	CUS_6472	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Putative lipoprotein ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.868
CUS_5503	CUS_6473	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.868
CUS_5503	CUS_7283	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730.	0.488
CUS_5503	CUS_7471	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687; match to protein family HMM PF06696.	0.654
CUS_5503	CUS_7752	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.440
CUS_5508	CUS_6472	Efflux ABC transporter, permease protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02687.	Putative lipoprotein ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.831
CUS_5508	CUS_6473	Efflux ABC transporter, permease protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02687.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.919
CUS_5508	CUS_7283	Efflux ABC transporter, permease protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02687.	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730.	0.664
CUS_6472	CUS_5174	Putative lipoprotein ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.806
CUS_6472	CUS_5503	Putative lipoprotein ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.868
CUS_6472	CUS_5508	Putative lipoprotein ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Efflux ABC transporter, permease protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF02687.	0.831
CUS_6472	CUS_6473	Putative lipoprotein ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.801
CUS_6472	CUS_7246	Putative lipoprotein ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.872
CUS_6472	CUS_7283	Putative lipoprotein ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730.	0.710
CUS_6472	CUS_7286	Putative lipoprotein ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.853
CUS_6472	CUS_7471	Putative lipoprotein ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687; match to protein family HMM PF06696.	0.868
CUS_6472	CUS_7752	Putative lipoprotein ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.862