STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_6520BNR/Asp-box repeat protein; Identified by match to protein family HMM PF02012. (764 aa)    
Predicted Functional Partners:
CUS_8076
Putative cellulose 1,4-beta-cellobiosidase; Identified by match to protein family HMM PF02011.
  
  0.994
CUS_5444
Ricin-type beta-trefoil lectin domain protein; Identified by match to protein family HMM PF00652; match to protein family HMM PF00657; match to protein family HMM PF01839.
  
 
   0.927
CUS_8160
FG-GAP repeat protein; Identified by match to protein family HMM PF00041.
  
 
   0.921
CUS_5441
Cellulose binding domain protein; Identified by match to protein family HMM PF00759; match to protein family HMM PF00942.
  
  0.853
CUS_5680
Dockerin type I repeat protein; Identified by match to protein family HMM PF00759.
  
  0.830
CUS_6119
Putative cellulase 1; Identified by match to protein family HMM PF00041; match to protein family HMM PF00759; match to protein family HMM PF02018; match to protein family HMM PF02927.
  
 
   0.829
CUS_6909
Putative cellulase 1; Identified by match to protein family HMM PF00759; match to protein family HMM PF02018; match to protein family HMM PF02927.
  
 
   0.827
CUS_7090
Putative endoglucanase C; Identified by match to protein family HMM PF00759; match to protein family HMM PF02018; match to protein family HMM PF02927.
  
 
   0.824
CUS_8158
Cellulase (glycosyl hydrolase family 5); Identified by match to protein family HMM PF00150; match to protein family HMM PF00553.
 
  
  0.785
CUS_5297
Ricin-type beta-trefoil lectin domain protein; Identified by match to protein family HMM PF00652.
  
 
  0.773
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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