Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_6522Bacterial membrane protein YfhO; Identified by match to protein family HMM PF09586. (996 aa)    
Predicted Functional Partners:
CUS_6523
Putative bactoprenol glucosyl transferase-like protein; Identified by match to protein family HMM PF00535.
 
 
 0.887
CUS_4877
Identified by match to protein family HMM PF04138.
 
   
 0.613
CUS_6521
Hypothetical protein; Identified by glimmer; putative.
       0.588
CUS_5646
AMP-binding enzyme; Identified by match to protein family HMM PF00106; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF08659.
     
  0.572
CUS_6524
Hypothetical protein; Identified by glimmer; putative.
       0.563
CUS_6525
Hypothetical protein; Identified by glimmer; putative.
       0.563
CUS_6194
HDIG domain protein; Identified by match to protein family HMM PF01966; match to protein family HMM TIGR00277.
  
     0.556
CUS_6941
Conserved domain protein.
  
     0.477
CUS_5984
Putative bactoprenol glucosyl transferase-like protein; Identified by match to protein family HMM PF00535.
 
 
 0.466
CUS_7138
Putative lipoprotein.
  
     0.460
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
Server load: low (20%) [HD]