Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_6664Hypothetical protein. (1927 aa)    
Predicted Functional Partners:
CUS_6623
Putative fibronectin-binding protein; Identified by match to protein family HMM PF05670; match to protein family HMM PF05833.
  
    0.752
CUS_6370
Hypothetical protein.
   
    0.713
CUS_7138
Putative lipoprotein.
  
     0.517
CUS_7677
Putative lipoprotein.
  
     0.482
CUS_6662
Diguanylate cyclase (GGDEF) domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
       0.472
CUS_6663
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
       0.472
CUS_7228
ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.
  
     0.452
CUS_7512
ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.
  
     0.442
CUS_5068
Hypothetical protein.
  
     0.436
CUS_7882
Signal peptidase I; Identified by match to protein family HMM PF00717; match to protein family HMM TIGR02228.
 
     0.431
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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