STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_6682Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753. (388 aa)    
Predicted Functional Partners:
CUS_7646
Rubredoxin; Identified by match to protein family HMM PF00301; match to protein family HMM PF01613.
 
 0.976
CUS_7680
Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992.
 
  
 0.878
CUS_8147
Rubredoxin; Identified by match to protein family HMM PF00301.
 
  
 0.555
CUS_6154
Transporter gate domain protein; Identified by match to protein family HMM PF07670.
   
    0.472
glnA
Glutamine synthetase, beta-grasp domain protein; Identified by match to protein family HMM PF00120; match to protein family HMM PF03951; Belongs to the glutamine synthetase family.
     
 0.459
CUS_6683
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
       0.452
CUS_6684
ABC transporter, ATP-binding protein.
       0.452
CUS_6685
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
       0.452
CUS_6000
Putative rubrerythrin; Identified by match to protein family HMM PF02915.
 
  
 0.435
CUS_7982
Cyclic diguanylate phosphodiesterase (EAL) domain protein; Identified by match to protein family HMM PF00563.
    
  0.425
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.