STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_6685ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664. (612 aa)    
Predicted Functional Partners:
CUS_6684
ABC transporter, ATP-binding protein.
 
  
 
0.855
CUS_6683
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
 
     0.800
CUS_5310
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
     
0.763
CUS_7084
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
     
0.539
CUS_4489
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
  
  
 
0.493
CUS_6682
Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753.
       0.452
CUS_4488
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
  
 
0.418
CUS_5645
Beta-ketoacyl synthase, N-terminal domain protein; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801.
  
 0.409
CUS_6686
Beta-mannanase/endoglucanase A domain protein.
       0.408
CUS_6375
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
  
 
0.402
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
Server load: medium (76%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.