CUS_6686 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUS_6686

Beta-mannanase/endoglucanase A domain protein. (598 aa)

Predicted Functional Partners:

CUS_7715

0.831

CUS_6391

0.827

CUS_5681

0.820

CUS_6394

0.817

CUS_6091

0.813

CUS_5609

0.810

CUS_5441

0.808

CUS_6227

0.805

CUS_5680

0.799

CUS_6389

0.799

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CUS_5441	CUS_5609	Cellulose binding domain protein; Identified by match to protein family HMM PF00759; match to protein family HMM PF00942.	Cellulase (glycosyl hydrolase family 5); Identified by match to protein family HMM PF00150; match to protein family HMM PF00404; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	0.488
CUS_5441	CUS_6091	Cellulose binding domain protein; Identified by match to protein family HMM PF00759; match to protein family HMM PF00942.	Putative cellulase; Identified by match to protein family HMM PF00041; match to protein family HMM PF00150.	0.820
CUS_5441	CUS_6227	Cellulose binding domain protein; Identified by match to protein family HMM PF00759; match to protein family HMM PF00942.	Cellulase (glycosyl hydrolase family 5); Identified by match to protein family HMM PF00150; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	0.849
CUS_5441	CUS_6389	Cellulose binding domain protein; Identified by match to protein family HMM PF00759; match to protein family HMM PF00942.	Cellulase (glycosyl hydrolase family 5); Identified by match to protein family HMM PF00150.	0.852
CUS_5441	CUS_6391	Cellulose binding domain protein; Identified by match to protein family HMM PF00759; match to protein family HMM PF00942.	Identified by match to protein family HMM PF00652; match to protein family HMM PF00657; match to protein family HMM PF03422.	0.904
CUS_5441	CUS_6686	Cellulose binding domain protein; Identified by match to protein family HMM PF00759; match to protein family HMM PF00942.	Beta-mannanase/endoglucanase A domain protein.	0.808
CUS_5441	CUS_7715	Cellulose binding domain protein; Identified by match to protein family HMM PF00759; match to protein family HMM PF00942.	Cellulase (glycosyl hydrolase family 5); Identified by match to protein family HMM PF00150; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	0.763
CUS_5609	CUS_5441	Cellulase (glycosyl hydrolase family 5); Identified by match to protein family HMM PF00150; match to protein family HMM PF00404; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	Cellulose binding domain protein; Identified by match to protein family HMM PF00759; match to protein family HMM PF00942.	0.488
CUS_5609	CUS_6227	Cellulase (glycosyl hydrolase family 5); Identified by match to protein family HMM PF00150; match to protein family HMM PF00404; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	Cellulase (glycosyl hydrolase family 5); Identified by match to protein family HMM PF00150; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	0.751
CUS_5609	CUS_6389	Cellulase (glycosyl hydrolase family 5); Identified by match to protein family HMM PF00150; match to protein family HMM PF00404; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	Cellulase (glycosyl hydrolase family 5); Identified by match to protein family HMM PF00150.	0.745
CUS_5609	CUS_6391	Cellulase (glycosyl hydrolase family 5); Identified by match to protein family HMM PF00150; match to protein family HMM PF00404; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	Identified by match to protein family HMM PF00652; match to protein family HMM PF00657; match to protein family HMM PF03422.	0.465
CUS_5609	CUS_6686	Cellulase (glycosyl hydrolase family 5); Identified by match to protein family HMM PF00150; match to protein family HMM PF00404; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	Beta-mannanase/endoglucanase A domain protein.	0.810
CUS_5680	CUS_5681	Dockerin type I repeat protein; Identified by match to protein family HMM PF00759.	Mannan endo-1,4-beta-mannosidase domain protein; Identified by match to protein family HMM PF02156; Belongs to the glycosyl hydrolase 26 family.	0.616
CUS_5680	CUS_6091	Dockerin type I repeat protein; Identified by match to protein family HMM PF00759.	Putative cellulase; Identified by match to protein family HMM PF00041; match to protein family HMM PF00150.	0.776
CUS_5680	CUS_6227	Dockerin type I repeat protein; Identified by match to protein family HMM PF00759.	Cellulase (glycosyl hydrolase family 5); Identified by match to protein family HMM PF00150; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	0.856
CUS_5680	CUS_6389	Dockerin type I repeat protein; Identified by match to protein family HMM PF00759.	Cellulase (glycosyl hydrolase family 5); Identified by match to protein family HMM PF00150.	0.846
CUS_5680	CUS_6391	Dockerin type I repeat protein; Identified by match to protein family HMM PF00759.	Identified by match to protein family HMM PF00652; match to protein family HMM PF00657; match to protein family HMM PF03422.	0.730
CUS_5680	CUS_6686	Dockerin type I repeat protein; Identified by match to protein family HMM PF00759.	Beta-mannanase/endoglucanase A domain protein.	0.799
CUS_5680	CUS_7715	Dockerin type I repeat protein; Identified by match to protein family HMM PF00759.	Cellulase (glycosyl hydrolase family 5); Identified by match to protein family HMM PF00150; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	0.783
CUS_5681	CUS_5680	Mannan endo-1,4-beta-mannosidase domain protein; Identified by match to protein family HMM PF02156; Belongs to the glycosyl hydrolase 26 family.	Dockerin type I repeat protein; Identified by match to protein family HMM PF00759.	0.616