STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_6711Hypothetical protein. (233 aa)    
Predicted Functional Partners:
CUS_6710
VTC domain protein; Identified by match to protein family HMM PF09359.
 
    0.986
CUS_6712
Putative lipoprotein.
 
     0.887
CUS_6713
Hypothetical protein.
 
     0.882
CUS_6461
Putative lipoprotein.
 
     0.773
CUS_7708
Dockerin type I repeat protein; Identified by match to protein family HMM PF00404.
 
     0.772
CUS_6401
Conserved domain protein.
  
  
 0.650
CUS_7168
Hypothetical protein.
  
  
 0.650
CUS_5343
Putative calcium-translocating P-type ATPase, PMCA-type; Identified by match to protein family HMM PF00122; match to protein family HMM PF00689; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494.
  
 
 0.641
CUS_5766
Putative calcium-translocating P-type ATPase, PMCA-type; Identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494.
  
 
 0.641
CUS_6695
Putative calcium-translocating P-type ATPase, PMCA-type.
  
 
 0.641
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.