STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_6719Putative sigma-E processing peptidase SpoIIGA. (276 aa)    
Predicted Functional Partners:
sigE
RNA polymerase sigma-E factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.925
CUS_5966
Putative stage II sporulation protein E; Identified by match to protein family HMM PF07228.
   
  
 0.804
CUS_5786
Conserved domain protein.
  
     0.757
CUS_5706
Conserved domain protein.
  
     0.754
CUS_7587
Conserved domain protein.
  
    0.754
CUS_6749
Putative membrane protein.
  
     0.747
CUS_5248
CAAX amino terminal protease family protein; Identified by match to protein family HMM PF02517.
  
     0.743
CUS_8123
Hypothetical protein; Identified by glimmer; putative.
  
     0.742
CUS_7601
Hypothetical protein; Identified by glimmer; putative.
  
     0.732
CUS_7602
Hypothetical protein; Identified by glimmer; putative.
  
     0.729
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.