STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_6730Identified by match to protein family HMM PF01841. (908 aa)    
Predicted Functional Partners:
CUS_6729
Identified by match to protein family HMM PF01882.
 
    0.937
CUS_6728
ATPase, AAA family.
 
     0.926
CUS_7314
ATPase, AAA family; Identified by match to protein family HMM PF07726; match to protein family HMM PF07728.
 
     0.766
CUS_4547
ATPase, AAA family; Identified by match to protein family HMM PF07726; match to protein family HMM PF07728.
 
     0.762
CUS_6731
Hypothetical protein; Identified by glimmer; putative.
       0.639
ung
uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
       0.639
CUS_4548
Identified by match to protein family HMM PF01882.
 
    0.558
CUS_6727
Conserved domain protein.
       0.516
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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