Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CUS_5339 | CUS_6733 | CUS_5339 | CUS_6733 | HAD hydrolase, family IA, variant 1; Identified by match to protein family HMM PF00702; match to protein family HMM PF02655; match to protein family HMM TIGR01549. | Putative diaminopimelate decarboxylase. | 0.700 |
| CUS_5339 | CUS_7567 | CUS_5339 | CUS_7567 | HAD hydrolase, family IA, variant 1; Identified by match to protein family HMM PF00702; match to protein family HMM PF02655; match to protein family HMM TIGR01549. | Saccharopine dehydrogenase; Identified by match to protein family HMM PF03435. | 0.735 |
| CUS_5339 | bioB | CUS_5339 | CUS_7506 | HAD hydrolase, family IA, variant 1; Identified by match to protein family HMM PF00702; match to protein family HMM PF02655; match to protein family HMM TIGR01549. | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | 0.706 |
| CUS_5339 | dapF | CUS_5339 | CUS_7947 | HAD hydrolase, family IA, variant 1; Identified by match to protein family HMM PF00702; match to protein family HMM PF02655; match to protein family HMM TIGR01549. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. Belongs to the diaminopimelate epimerase family. | 0.697 |
| CUS_6733 | CUS_5339 | CUS_6733 | CUS_5339 | Putative diaminopimelate decarboxylase. | HAD hydrolase, family IA, variant 1; Identified by match to protein family HMM PF00702; match to protein family HMM PF02655; match to protein family HMM TIGR01549. | 0.700 |
| CUS_6733 | CUS_7567 | CUS_6733 | CUS_7567 | Putative diaminopimelate decarboxylase. | Saccharopine dehydrogenase; Identified by match to protein family HMM PF03435. | 0.894 |
| CUS_6733 | CUS_7760 | CUS_6733 | CUS_7760 | Putative diaminopimelate decarboxylase. | Putative aspartate kinase; Identified by match to protein family HMM PF01842; Belongs to the aspartokinase family. | 0.907 |
| CUS_6733 | CUS_7919 | CUS_6733 | CUS_7919 | Putative diaminopimelate decarboxylase. | Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583. | 0.669 |
| CUS_6733 | CUS_7979 | CUS_6733 | CUS_7979 | Putative diaminopimelate decarboxylase. | Diaminopimelate dehydrogenase; Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate. | 0.859 |
| CUS_6733 | bioB | CUS_6733 | CUS_7506 | Putative diaminopimelate decarboxylase. | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | 0.643 |
| CUS_6733 | dapA | CUS_6733 | CUS_6202 | Putative diaminopimelate decarboxylase. | Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.876 |
| CUS_6733 | dapF | CUS_6733 | CUS_7947 | Putative diaminopimelate decarboxylase. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. Belongs to the diaminopimelate epimerase family. | 0.837 |
| CUS_6733 | dapL | CUS_6733 | CUS_7687 | Putative diaminopimelate decarboxylase. | LL-diaminopimelate aminotransferase; Involved in the synthesis of meso-diaminopimelate (m-DAP or DL-DAP), required for both lysine and peptidoglycan biosynthesis. Catalyzes the direct conversion of tetrahydrodipicolinate to LL- diaminopimelate. | 0.675 |
| CUS_6733 | murE | CUS_6733 | CUS_6549 | Putative diaminopimelate decarboxylase. | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.770 |
| CUS_7567 | CUS_5339 | CUS_7567 | CUS_5339 | Saccharopine dehydrogenase; Identified by match to protein family HMM PF03435. | HAD hydrolase, family IA, variant 1; Identified by match to protein family HMM PF00702; match to protein family HMM PF02655; match to protein family HMM TIGR01549. | 0.735 |
| CUS_7567 | CUS_6733 | CUS_7567 | CUS_6733 | Saccharopine dehydrogenase; Identified by match to protein family HMM PF03435. | Putative diaminopimelate decarboxylase. | 0.894 |
| CUS_7567 | CUS_7919 | CUS_7567 | CUS_7919 | Saccharopine dehydrogenase; Identified by match to protein family HMM PF03435. | Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583. | 0.713 |
| CUS_7567 | bioB | CUS_7567 | CUS_7506 | Saccharopine dehydrogenase; Identified by match to protein family HMM PF03435. | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. | 0.673 |
| CUS_7567 | dapF | CUS_7567 | CUS_7947 | Saccharopine dehydrogenase; Identified by match to protein family HMM PF03435. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. Belongs to the diaminopimelate epimerase family. | 0.834 |
| CUS_7760 | CUS_6733 | CUS_7760 | CUS_6733 | Putative aspartate kinase; Identified by match to protein family HMM PF01842; Belongs to the aspartokinase family. | Putative diaminopimelate decarboxylase. | 0.907 |
page 1 of 3