STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_6737FeoA domain protein; Identified by match to protein family HMM PF04023. (69 aa)    
Predicted Functional Partners:
CUS_5599
Putative ferrous iron transport protein B; Identified by match to protein family HMM PF01926; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231.
  
  
 0.796
feoB
Ferrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family.
 
  
 0.734
CUS_6738
Iron dependent repressor, N-terminal DNA binding domain protein; Identified by match to protein family HMM PF01325.
  
  
 0.712
CUS_6736
Hypothetical protein.
 
    0.640
CUS_6735
Hypothetical protein.
       0.466
CUS_6739
Sugar-binding domain protein; Identified by match to protein family HMM PF00532.
  
    0.420
CUS_6776
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
  
     0.418
CUS_7061
CarD-like protein.
  
     0.418
CUS_7269
Conserved domain protein.
  
     0.415
CUS_5105
Conserved domain protein.
  
     0.410
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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