Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CUS_6738Iron dependent repressor, N-terminal DNA binding domain protein; Identified by match to protein family HMM PF01325. (123 aa)    
Predicted Functional Partners:
CUS_6737
FeoA domain protein; Identified by match to protein family HMM PF04023.
  
  
 0.711
CUS_5496
ABC 3 transport family protein; Identified by match to protein family HMM PF00950.
  
 
 0.552
CUS_5497
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.548
CUS_5021
ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Methionine importer (TC 3.A.1.24) family.
    
   0.504
CUS_5346
ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Methionine importer (TC 3.A.1.24) family.
    
   0.504
CUS_6698
ABC transporter, substrate-binding protein; Identified by match to protein family HMM PF01297; match to protein family HMM PF09223.
  
 
 0.472
CUS_6739
Sugar-binding domain protein; Identified by match to protein family HMM PF00532.
  
    0.465
CUS_6740
Oxidoreductase; Identified by match to protein family HMM PF09719.
 
     0.439
CUS_5498
ABC transporter, substrate-binding protein; Identified by match to protein family HMM PF01297.
  
 
 0.438
CUS_6736
Hypothetical protein.
       0.438
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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