STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_6749Putative membrane protein. (805 aa)    
Predicted Functional Partners:
CUS_6748
RNA methyltransferase, TrmH family, group 3; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
  
    0.794
CUS_5781
Conserved domain protein; Belongs to the UPF0342 family.
  
     0.774
CUS_6067
Hypothetical protein; Identified by glimmer; putative.
  
     0.774
CUS_6734
Putative lipoprotein.
  
     0.774
CUS_8123
Hypothetical protein; Identified by glimmer; putative.
  
     0.774
CUS_5786
Conserved domain protein.
  
  
 0.773
CUS_5546
Conserved domain protein.
  
     0.772
CUS_7331
Conserved domain protein.
  
     0.771
CUS_6925
Conserved domain protein.
  
     0.770
CUS_7290
Conserved domain protein.
  
     0.770
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.