Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_6752Conserved domain protein. (429 aa)    
Predicted Functional Partners:
CUS_6751
Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
 
  0.949
CUS_6753
Putative bacteriocin ABC transporter; Identified by match to protein family HMM PF00005.
  
   0.856
CUS_5173
Conserved domain protein.
 
  
 0.704
CUS_5016
Hypothetical protein.
  
     0.589
CUS_5256
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF02687.
  
 0.567
CUS_5762
Conserved domain protein.
  
     0.489
CUS_6750
Hypothetical protein; Identified by glimmer; putative.
       0.489
CUS_5171
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730.
  
   0.481
CUS_6754
Conserved domain protein.
       0.464
CUS_7465
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
  
     0.460
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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