CUS_6769 protein (Ruminococcus albus 8) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CUS_6769

Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687. (1005 aa)

Predicted Functional Partners:

CUS_6768

0.935

CUS_5836

0.834

CUS_6767

0.793

CUS_6766

0.739

CUS_6098

0.555

CUS_7472

0.555

CUS_7751

0.549

CUS_5839

0.523

CUS_5313

0.514

CUS_6860

0.509

Your Current Organism:

Ruminococcus albus 8

NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CUS_5313	CUS_6769	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.514
CUS_5836	CUS_6769	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.834
CUS_5839	CUS_6766	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Putative DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.870
CUS_5839	CUS_6769	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.523
CUS_6098	CUS_6769	Putative lipoprotein ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.555
CUS_6766	CUS_5839	Putative DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.870
CUS_6766	CUS_6767	Putative DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.959
CUS_6766	CUS_6768	Putative DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.702
CUS_6766	CUS_6769	Putative DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.739
CUS_6767	CUS_6766	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Putative DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.959
CUS_6767	CUS_6768	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.705
CUS_6767	CUS_6769	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.793
CUS_6768	CUS_6766	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Putative DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.702
CUS_6768	CUS_6767	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.705
CUS_6768	CUS_6769	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.935
CUS_6769	CUS_5313	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.514
CUS_6769	CUS_5836	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.834
CUS_6769	CUS_5839	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.	0.523
CUS_6769	CUS_6098	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Putative lipoprotein ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.555
CUS_6769	CUS_6766	Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Putative DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.739