Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CUS_6769Efflux ABC transporter, permease protein; Identified by match to protein family HMM PF02687. (1005 aa)    
Predicted Functional Partners:
CUS_6768
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
   0.921
CUS_5836
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
   0.797
CUS_6767
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.
 
     0.782
CUS_6766
Putative DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
 
     0.739
CUS_5839
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.
 
 
   0.592
CUS_6765
Hypothetical protein; Identified by glimmer; putative.
       0.495
ppiB
Peptidyl-prolyl cis-trans isomerase B; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
 
     0.488
CUS_6098
Putative lipoprotein ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
   0.458
CUS_7472
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
   0.458
CUS_7751
Putative lipoprotein ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
   0.451
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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