Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CUS_6774 | CUS_6775 | CUS_6774 | CUS_6775 | Conserved domain protein. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.571 |
| CUS_6774 | CUS_6776 | CUS_6774 | CUS_6776 | Conserved domain protein. | Radical SAM domain protein; Identified by match to protein family HMM PF04055. | 0.571 |
| CUS_6774 | CUS_6777 | CUS_6774 | CUS_6777 | Conserved domain protein. | Putative 5-nitroimidazole resistance protein NimA; Identified by match to protein family HMM PF01243. | 0.423 |
| CUS_6775 | CUS_6774 | CUS_6775 | CUS_6774 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Conserved domain protein. | 0.571 |
| CUS_6775 | CUS_6776 | CUS_6775 | CUS_6776 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Radical SAM domain protein; Identified by match to protein family HMM PF04055. | 0.773 |
| CUS_6775 | CUS_6777 | CUS_6775 | CUS_6777 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Putative 5-nitroimidazole resistance protein NimA; Identified by match to protein family HMM PF01243. | 0.556 |
| CUS_6775 | CUS_6779 | CUS_6775 | CUS_6779 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | Conserved domain protein. | 0.428 |
| CUS_6775 | tyrS | CUS_6775 | CUS_6778 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | tyrosine--tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. | 0.428 |
| CUS_6776 | CUS_6774 | CUS_6776 | CUS_6774 | Radical SAM domain protein; Identified by match to protein family HMM PF04055. | Conserved domain protein. | 0.571 |
| CUS_6776 | CUS_6775 | CUS_6776 | CUS_6775 | Radical SAM domain protein; Identified by match to protein family HMM PF04055. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.773 |
| CUS_6776 | CUS_6777 | CUS_6776 | CUS_6777 | Radical SAM domain protein; Identified by match to protein family HMM PF04055. | Putative 5-nitroimidazole resistance protein NimA; Identified by match to protein family HMM PF01243. | 0.616 |
| CUS_6776 | CUS_6779 | CUS_6776 | CUS_6779 | Radical SAM domain protein; Identified by match to protein family HMM PF04055. | Conserved domain protein. | 0.428 |
| CUS_6776 | tyrS | CUS_6776 | CUS_6778 | Radical SAM domain protein; Identified by match to protein family HMM PF04055. | tyrosine--tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. | 0.428 |
| CUS_6777 | CUS_6774 | CUS_6777 | CUS_6774 | Putative 5-nitroimidazole resistance protein NimA; Identified by match to protein family HMM PF01243. | Conserved domain protein. | 0.423 |
| CUS_6777 | CUS_6775 | CUS_6777 | CUS_6775 | Putative 5-nitroimidazole resistance protein NimA; Identified by match to protein family HMM PF01243. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.556 |
| CUS_6777 | CUS_6776 | CUS_6777 | CUS_6776 | Putative 5-nitroimidazole resistance protein NimA; Identified by match to protein family HMM PF01243. | Radical SAM domain protein; Identified by match to protein family HMM PF04055. | 0.616 |
| CUS_6777 | CUS_6779 | CUS_6777 | CUS_6779 | Putative 5-nitroimidazole resistance protein NimA; Identified by match to protein family HMM PF01243. | Conserved domain protein. | 0.580 |
| CUS_6777 | tyrS | CUS_6777 | CUS_6778 | Putative 5-nitroimidazole resistance protein NimA; Identified by match to protein family HMM PF01243. | tyrosine--tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. | 0.580 |
| CUS_6779 | CUS_6775 | CUS_6779 | CUS_6775 | Conserved domain protein. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. | 0.428 |
| CUS_6779 | CUS_6776 | CUS_6779 | CUS_6776 | Conserved domain protein. | Radical SAM domain protein; Identified by match to protein family HMM PF04055. | 0.428 |
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