STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_6781Hypothetical protein. (323 aa)    
Predicted Functional Partners:
CUS_6254
Competence/damage-inducible protein CinA C-terminal domain protein; Identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; Belongs to the CinA family.
     
 0.738
CUS_6780
Putative ribosomal RNA large subunit methyltransferase A; Identified by match to protein family HMM PF08241.
  
    0.671
CUS_6305
Hypothetical protein; Identified by glimmer; putative.
   
   0.630
CUS_5533
Identified by match to protein family HMM PF00082; match to protein family HMM PF06280.
  
 
 0.593
CUS_4754
Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092.
    
 0.580
CUS_5988
Glycosyl hydrolase family 8; Identified by match to protein family HMM PF01270.
  
   
 0.541
CUS_4251
Putative lipoprotein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.
  
     0.539
CUS_5645
Beta-ketoacyl synthase, N-terminal domain protein; Identified by match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF02801.
     
 0.515
CUS_5883
Putative lipoprotein.
  
     0.509
CUS_6129
ABC transporter, solute-binding protein; Identified by match to protein family HMM PF01547.
 
     0.447
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.