STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Coexpression
Experiments
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[Homology]
Score
CUS_6796Putative RNA polymerase sigma-G factor; Identified by match to protein family HMM PF04539; match to protein family HMM PF04545; match to protein family HMM PF08281. (162 aa)    
Predicted Functional Partners:
sigE
RNA polymerase sigma-E factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.903
CUS_5966
Putative stage II sporulation protein E; Identified by match to protein family HMM PF07228.
  
  
 0.838
CUS_5685
Sporulation initiation factor Spo0A C-terminal domain protein; Identified by match to protein family HMM PF08769.
  
   
 0.805
spoIVA
Stage IV sporulation protein A; Identified by match to protein family HMM PF09547; match to protein family HMM TIGR02836.
  
  
 0.797
CUS_6320
Putative stage V sporulation protein T; Identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439.
  
   
 0.788
spoIIID
Stage III sporulation protein D.
  
  
 0.786
spoVAC
Stage V sporulation protein AC; Identified by match to protein family HMM PF03862; match to protein family HMM TIGR02838.
  
     0.763
spoVAD
Stage V sporulation protein AD; Identified by match to protein family HMM PF07451.
  
    0.759
spoVAE
Stage V sporulation protein AE; Identified by match to protein family HMM PF03862; match to protein family HMM TIGR02839.
  
     0.754
spoIVB
SpoIVB peptidase; Identified by match to protein family HMM PF05580; match to protein family HMM TIGR02860.
  
     0.754
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.