Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CUS_6815ABC transporter, permease protein; Identified by match to protein family HMM PF00528. (314 aa)    
Predicted Functional Partners:
CUS_6811
ABC transporter, substrate-binding protein, family 5; Identified by match to protein family HMM PF00496.
 
 0.999
CUS_6814
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 0.999
CUS_6813
Putative dipeptide ABC transporter, ATP-binding protein DppD; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00005.
 
 0.998
CUS_6812
ABC transporter, ATP-binding protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00005; match to protein family HMM PF02463.
 
 0.997
CUS_6816
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
    
  0.808
CUS_6817
ABC transporter, ATP-binding protein.
    
  0.808
CUS_4435
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.765
CUS_5641
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.763
CUS_5451
ABC transporter, ATP-binding family protein; This gene contains a nucleotide ambiguity which may be the result of a sequencing error.
  
 0.730
CUS_5581
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 0.730
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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